ClippingMetrics
Clipping metrics for a specific read type
Fields
| Column | Type | Description |
|---|---|---|
read_type | ReadType | The type of read this metric applies to |
reads | usize | Total number of reads examined |
reads_unmapped | usize | Number of reads that became unmapped due to clipping |
reads_clipped_pre | usize | Number of reads with any clipping before clip |
reads_clipped_post | usize | Number of reads with any clipping after clip |
reads_clipped_five_prime | usize | Number of reads clipped on 5’ end |
reads_clipped_three_prime | usize | Number of reads clipped on 3’ end |
reads_clipped_overlapping | usize | Number of reads clipped due to overlapping reads |
reads_clipped_extending | usize | Number of reads clipped due to extending past mate |
bases | usize | Total number of aligned bases after clipping |
bases_clipped_pre | usize | Number of bases clipped before clip |
bases_clipped_post | usize | Number of bases clipped after clip |
bases_clipped_five_prime | usize | Number of bases clipped on 5’ end |
bases_clipped_three_prime | usize | Number of bases clipped on 3’ end |
bases_clipped_overlapping | usize | Number of bases clipped due to overlapping reads |
bases_clipped_extending | usize | Number of bases clipped due to extending past mate |