FamilySizeMetric
Metrics quantifying the distribution of different kinds of read family sizes.
Three kinds of families are described:
- CS (Coordinate & Strand): families grouped by unclipped 5’ genomic positions and strands
- SS (Single Strand): single-strand families using UMIs, not linking opposing strands
- DS (Double Strand): families combining single-strand families from opposite strands
Fields
| Column | Type | Description |
|---|---|---|
family_size | usize | The family size (number of read pairs grouped together) |
cs_count | usize | Count of CS families with this size |
cs_fraction | f64 | Fraction of all CS families with this size |
cs_fraction_gt_or_eq_size | f64 | Fraction of CS families with size >= family_size |
ss_count | usize | Count of SS families with this size |
ss_fraction | f64 | Fraction of all SS families with this size |
ss_fraction_gt_or_eq_size | f64 | Fraction of SS families with size >= family_size |
ds_count | usize | Count of DS families with this size |
ds_fraction | f64 | Fraction of all DS families with this size |
ds_fraction_gt_or_eq_size | f64 | Fraction of DS families with size >= family_size |